Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1028866.1a with 5 members (malate synthase)

LUCA / Eukaryota / Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta /

... /

Euphyllophyta / Spermatophyta / Magnoliopsida / Mesangiospermae / Magnoliidae /

Magnoliales

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

97.1%

This HOG has 16 similar HOGs:

HOG ID	Deepest level	HOG size	Prevalence	Similarity
HOG:E1033306	LUCA	372	98.7%	2
HOG:E0568854	Nematoda	15	66.7%	2
HOG:E0145976	Sar	14	92.9%	2
HOG:E0479600	Dikarya	5	100.0%	2
HOG:E0770922	Bilateria	5	80.0%	2
HOG:E0053362	Dictyostelia	4	100.0%	2
HOG:E0849594	g__Anaeromyxobacter	4	100.0%	2
HOG:E0304420	Spermatophyta	3	100.0%	2
HOG:E0008716	c__Thermoproteia	19	100.0%	1
HOG:E0299588	Spermatophyta	7	100.0%	1
HOG:E0479601	Dikarya	4	100.0%	1
HOG:E0094906	Perkinsus	3	66.7%	1
HOG:E0830677	Eukaryota	3	100.0%	1
HOG:E0832091	Eukaryota	3	100.0%	1
HOG:E0983665	c__Gammaproteobacteria	3	100.0%	1

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HOG:E1028866.1a with 5 members (malate synthase)

Based on:

This HOG has 16 similar HOGs: